2025
63-Aliakbar Ebrahimi, Hamed Ghorbanpoor, Elif Apaydın, Bahar Demir Cevizlidere, Ceren Özel, Emre Tüfekçioğlu, Yücel Koç, Ahmet Emin Topal, Özlem Tomsuk, Kadri Güleç, Nuran Abdullayeva, Murat Kaya, Aynaz Ghorbani, Tayfun Şengel, Zineb Benzait, Onur Uysal, Ayla Eker Sarıboyacı, Fatma Doğan Güzel, Hemant Singh, Shabir Hassan, Hüseyin Ankara, Suat Pat, Eray Atalay, Huseyin Avci. Convenient rapid prototyping microphysiological niche for mimicking liver native basement membrane: Liver sinusoid on a chip. Colloids and Surfaces B: Biointerfaces 245, 114292 (2025). https://doi.org/10.1016/j.colsurfb.2024.114292
2024
62-Esra Cinkilli Aktağ , Sıdıka Songül Yalçin, Anıl Yіrün, Aylin Balci Özyurt, Pınar Erkekoğlu. Unveiling connections: bisphenol A and vitamin D dynamics in breast milk among healthy lactating mothers. International Journal of Environmental Health Research 2024. https://doi.org/10.1080/09603123.2024.2412118
61-Sevimli, Murat, Ulukan Inan, Nigar Seyidova, Laman Guluzade, Zarifa Ahmadova, Kadri Gulec, Ahmet Emin Topal, Tugba Semerci Sevimli. In vitro Chondrogenic Induction Promotes the Expression Level of IL-10 via the TGF-β/SMAD and Canonical Wnt/β-catenin Signaling Pathways in Exosomes Secreted by Human Adipose Tissue-derived Mesenchymal Stem Cells. Cell Biochemistry and Biophysics, 2024. https://doi.org/10.1007/s12013-024-01461-z
60-Aylin Balci-Ozyurt, Anıl Yirun, Deniz Arca Cakır, İbrahim Ozcelik, Merve Bacanli, Gizem Ozkemahli, Suna Sabuncuoglu, Nurşen Basaran, Pınar Erkekoglu. Comparative in silico and in vitro evaluation of possible toxic effects of bisphenol derivatives in HepG2 cells. Toxicology Research (Camb). 2024 . https://doi.org/10.1093/toxres/tfae127
59- Ulviyye Nemetova, Pınar Siyah, Tuğçe Boran, Çiğdem Bilgi, Mustafa Özyürek, Sibel Şahinler Ayla. Synthesis and In Silico Evaluation of Piperazine-Substituted 2, 3-Dichloro-5, 8-dihydroxy-1, 4-naphthoquinone Derivatives as Potential PARP-1 Inhibitors. ACS Omega, 2024. https://doi.org/10.1021/acsomega.4c04915
58-Pınar Siyah, Fatih Kocabaş. Isolation of Human Hematopoietic Stem Cells from an Apheresis Sample. Methods in Molecular Biology, 1-9, 2024. https://doi.org/10.1007/7651_2024_557
57-Fırat Barış Barlas, Bilge Olceroglu, Didem Ag Seleci, Zinar Pınar Gums, Pınar Siyah, Meriam Dabbek, Georg Garnweitne, Frank Stahl, Thomas Scheper, Suna Timur. Enhancing chemotherapeutic efficacy: Niosome‐encapsulated Dox‐Cis with MUC‐1 aptamer. Cancer Medicine, 13(15), e70079, 2024. https://doi.org/10.1002/cam4.70079
56-Selay Tornaci, Merve Erginer, Umut Bulut, Beste Sener, Elifsu Persilioglu, İsmail Bergutay Kalaycilar, Emine Güler Çelik, Hasret Yardibi, Pınar Siyah, Oğuzhan Karakurt, Ali Cirpan, Barış Gokalsin, Ahmet Murat Senisik, Fırat Barış Barlas. Innovative fluorescent polymers in niosomal carriers: a novel approach to enhancing cancer therapy and imaging. Macromolecular Bioscience, 2024. https://doi.org/10.1002/mabi.202400343
56- Panagiou Mavroeidi, Leandros P. Zorba, Nikolaos V. Tzuras, Stavros P. Neofotistos, Nikitas Georgiou, Kader Şahin, Murat Şentürk, Serdar Durdağı. Vougioukalakis GC, Mavromoustakos T. Are Terminal Alkynes Necessary for MAO-A/MAO-B Inhibition? A New Scaffold Is Revealed. Molecules. 2024 May 24;29(11):2486. doi: 10.3390/molecules29112486.
55- Radja Teiar, Famara Sane, İsmail Erol, Magloire Pandoua Nekoua, Didier Lecouturier , Rabah Bukherroub, Serdar Durdağı, Didier Hober, Djamel Kurutucu . Enterocin DD14 can inhibit the infection of eukaryotic cells with enveloped viruses. Arch Microbiol. 2024 May 20;206(6):269. doi: 10.1007/s00203-024-04002-7.
54- Michael Tapera, Eylül Doğan, Kader Şahin, Gaye Alara Gözkamane, Hüseyin Kekeçmuhammed, Semiha Sandal, Ajda Coker Gurkan, Rıfat Emin Bora, Anber Anber, Serdar Durdagi, Yunus Zorlu, Emin Sarıpınar, Imidazole-based hydrazones as Potent Anti-Colon cancer Agents: Design, Synthesis, Biological Evaluation and Computational studies, Journal of Molecular Structure, 1318, 2024, 139240, https://doi.org/10.1016/j.molstruc.2024.139240
53- Göksun Demirel, Sonia Sanajou, Anıl Yirün, Deniz Arca Çakır, Aylin Balcı Özyurt, Aysel Berkkan, Terkan Baydar, Pınar Erkekoğlu. Walnut oil: a promising nutraceutical in reducing oxidative stress and improving cholinergic activity in an in vitro Alzheimer's disease model. Toxicology Research (Camb). 2024 Jul 1;13(4):tfae097. https://doi.org/10.1093/toxres/tfae097
52- Panagiou Mavroeidi, Leandros P. Zorba, Nikolaos V. Tzouras, Stavros P. Neofotistos, Nikitas Georgiou, Kader Şahin, Murat Senturk, Serdar Durdağı, Georgios C. Vougioukalakis, Thomas Mavromoustakos, Probing the MAO enzymes with a novel family of quaternary propargylamine derivatives, Molecules, 2024, 29,11, 2486.
51- Kübra Kahveci, Mustafa Barbaros Düzgün, Abdullah Emre Atış, Abdullah Yılmaz, Aida Shahraki, Başak Coşkun, Serdar Durdağı. Necla Birgül İyison Discovering allotastatin type-C receptor specific agonists. Nature Communications. 2024, 15, 3965. DOI:10.1038/s41467-024-48156-w
50- Ehsan Sayyah, Lalehan Oktay, Hüseyin Tunç, Serdar Durdağı. Developing Dynamic Structure-based Pharmacophore and ML-Trained QSAR Models for the Discovery of Novel Resistance-Free RET Tyrosine Kinase Inhibitors. ChemMedChem 2024
49- Saima İkram, Ehsan Sayyah, Serdar Durdağı.Identifying Potential SOS1 Inhibitors via Virtual Screening of Multiple Small Molecule Libraries against KRAS-SOS1 Interface. ChemBioChem 2024
48- Salma Ghazy, Lalehan Oktay, Serdar Durdağı. A novel algorithm for the virtual screening of extensive small molecule libraries against ERCC1/XPF protein-protein interaction for the identification of therapeutic resistance-bypassing small anticancer molecules. Turk. J. Biol. 2024
47- Hüseyin Kekeçmuhammed, Michael Tapera, Kader Şahin, Ezgi Günger, Emin Sarıpınar, Ajda Çöker- Gürkan, Serdar Durdağı. The suppressive effect of novel hydrazones-tethered imidazoles in HCT-116 and HT-29 colorectal cancer cells: Synthesis, biological activity, and molecular modeling studies. ChemistrySelect 2024 DOI: 10.1002/slct.202303108
46- Reşit Çakmak, Eyüp Başaran, Kader Şahin, Murat Şentürk, Serdar Durdağı. Synthesis of Novel Hydrazide-Hydrazone Compounds and in vitro and in silico Investigation of their Biological Activities against AChE, BChE, and hCA I and II. ACS Omega. 2024, 9, 18, 20030-20041. https://doi: 10.1021/acsomega.3c10182
45- Musa Özil, Halis T. Balaydın, Berna Doğan, Murat Şentürk, Serdar Durdağı. Efficient, rapid, and high-yield synthesis of aryl Schiff base derivatives and their in vitro and in silico inhibition studies of hCA I, hCA II, AChE, and BuChE. Arch. Pharm. 2024, e2300266. DOI: 10.1002/ardp.202300266.
44- Ezgi Sambur, Lalehan Oktay, Serdar Durdağı. Covalent docking-driven virtual screening of extensive small-molecule libraries against Bruton tyrosine kinase for the identification of highly selective and potent novel therapeutic candicates. J. Mol. Graph. Model. 2024, 130, 108762. DOI: 10.1016/j.jmgm.2024.108762.
2023
43- Basma Sukkar, Lalehan Oktay, Ayşe Sahaboğlu, Aylin Moayedi, Şima Zenouri, Tamer Al-Maghout, Antolin Canto, Maria Miranda, Serdar Durdagi, Zohreh Hosseinzadeh. Inhibition of altered Orai1 channels in Muller cells protects photoreceptors in retinal degeneration. Glia, 2023, 71(11):2511-2526.
42- Safa Haddad, Lalehan Oktay, İsmail Erol, Kader Sahin, Serdar Durdağı. Utilizing Heteroatom Types and Numbers from Extensive Ligand Libraries to Develop Novel hERG Blocker QSAR Models Using Machine Learning-Based Classifiers. ACS Omega 2023, 8(43):40864-40877.
41-Merve Buke Sahin, Murat Cagan, Anil Yirun, Aylin Balcı Ozyurt, Selinay Basak Erdemli Köse, Irem Iyigün, Melda Çelik, Ozgur Ozyuncu, Pınar Erkekoglu& Cavit Isık Yavuz. Bisphenol derivatives in cord blood and association between thyroid hormones and potential exposure sources, International Journal of Environmental Health Research, 2023 https://doi.org/10.1080/09603123.2023.2286016
40-N İpek Kırmızı Sönmez, Volkan Aydın, Ömer Ataç, Ahmet Akıcı, Association of arbitrary prescribing behavior to costly drug expenditures: a pharmacoeconomic study in primary care, Postgraduate Medical Journal, 2023;, qgad092, https://doi.org/10.1093/postmj/qgad092
39-Aylin Balcı Özyurt, Anıl Yirün, Deniz Arca Çakır, N. Dilara Zeybek, Didem Oral, Suna Sabuncuoğlu & Pınar Erkekoğlu. Evaluation of possible cytotoxic, genotoxic and epigenotoxic effects of titanium dioxide nanoparticles and possible protective effect of melatonin, Toxicology Mechanisms and Methods, 2023. DOI: 10.1080/15376516.2023.2259980
38-Sevgi Gülyüz, Melike Sessevmez, Gökçen Ukuşer, Melek Parlak Khalily, Selen Tiryaki, Tarik Sipahioğlu, Kaan Birgül, İpek Ömeroğlu, Salih Özçubukçu, Dilek Telci, Ş. Güniz Küçükgüzel, Mahmut Durmuş, Erdal Cevher, Özgur Yılmaz. A Novel PETOx-Based Nanogel Targeting Prostate Cancer Cells for Drug Delivery. Macromolecular Bioscience, 2023, 2300324. https://doi.org/10.1002/mabi.202300324
37-Fatma Pınar Tabanlı, Sıdıka Songül Yalçın, Sedef Ramoğlu, Şadıman Kıykaç Altınbaş, Anıl Yirün, Aylin Balcı Özyurt, Funda Güçel, Pınar Erkekoğlu, Kadriye Yurdakök. Association of bisphenol A with 25(OH)D, 1,25(OH)2D levels and 1,25(OH)2D/25(OH)D ratio in cord blood. Environmental Science and Pollution Research. 2023 Aug 26. DOI: 10.1007/s11356-023-29288-w
36- Zeyad Tareq Jasim Alabdulraheem, Serdar Durdagı. Ab initio and comparative 3D modeling of FAM222A-encoded protein and target-driven-based virtual screening for the identification of novel therapeutics against Alzheimer's disease. J Mol Graph Model. 2023 Jul 26;125:108575. doi: 10.1016/j.jmgm.2023.108575.
35-Alper Devrim Ozkan, Tharaka Wijerathne, Tina Gettas, Jérôme Lacroix, Force-induced motions of the PIEZO1 blade probed with fluorimetry, Cell Reports, 2023. DOI: 10.1016/j.celrep.2023.112837
34- Aylin Balcı Özyurt, Pınar Erkekoğlu, Naciye Dilara Zeybek, Ali Aşcı, Ünzile Yaman, Ofcan Oflaz, Murat Kızılgün, Evin İşcan, Tuğçe Batur, Mehmet Öztürk & Belma Koçer-Gümüşel, Toxic effects of Aroclor 1254 on rat liver and modifying roles of selenium, International Journal of Environmental Health Research, 2023. DOI: 10.1080/09603123.2023.2223470
33- Anıl Yirün, Deniz Arca Çakır, Sonia Sanajou, Seninay Başak Erdemli Köse, Aylin Balcı Özyurt, Dilara Zeybek, Özlem Bozdemir, Terken Baydar, Pınar Erkekoglu. Evaluation of the effects of Herpes simplex glycoprotein B on complement system and cytokines in in vitro models of Alzheimer's disease. Journal of Applied Toxicology. 2023. https://doi.org/10.1002/jat.4471
32- Tharaka Wijerathne, Alper Devrim Özkan & Jerome Lacroix. Microscopic mechanism of PIEZO1 activation by pressure-induced membrane stretch, Journal of General Physiology, 2023, DOI: 10.1085/jgp.202213260
31 - Özge Yeşildemir, Yasemin Akdevelioğlu, Selinay Başak Erdemli Köse, Deniz Arca Çakır, Anıl Yirun, Aylin Balcı Özyurt, Suna Sabuncuoğlu, Aysu Duyan Çamurdan, Bahar Çuhacı Çakır, Pınar Erkekoğlu, Comparison of melamine exposure by feeding practices in babies aged 0–6 months, Environmental Toxicology and Pharmacology, 2023,
https://doi.org/10.1016/j.etap.2023.104065
30-Hüseyin Tunç, Berna Doğan, Büşra Nur Darendeli Kiraz, Murat Sarı, Serdar Durdağı, Seyfullah Kotil Prediction of HIV-1 protease resistance using genotypic, phenotypic, and molecular information with artificial neural networks. PeerJ. 2023, 11:e14987. DOI: 10.7717/peerj.14987.
29- Necati Atalay, Enver Kamil Akcan, Mehmet Gül, Esra Ayan, Ebru Desta, Fatma Betül Ertem Kuzucu, Nurettin Tokay, Barış Çakılkaya, Zeliş Nergiz, Gözde Karakadıoğlu Usta, Abdullah Kepceoğlu, İlkin Yapıcı, Bilge Tosun, Nilüfer Baldır, Günseli Yıldırım, J Austın Johnson, Ömür Güven, Alaleh Şafii, Nazlı Eylül Arslan, Merve Yılmaz, Cahine Kulakman, Seyide Seda Paydos, Seynep Sena Çinal, Kardelen Şabanoğlu, Ayşegül Pazarçeviren, Ayşenur Yılmaz, Başak Canbay, Bengisu Aşçı, Esra Kartal, Serra Tavlı, Mehmet Çalıseki, Günce Göç, Arif Mermer, Gamze Yeşilay, Sevde Altuntaş, Hıroshı Tateıshı, Masamı Otsuka, Mıkako Fujıta, Şaban Tekin, Halilibrahim Çiftçi, Serdar Durdağı, Gizem Dinler Doğanay, Ezgi Karaca, Burcu Kaplan Türköz, Burak Veli Kabasakal, Ahmet Katı, Hasan Demirci. Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "Turkish DeLight". Turk. J. Biol.. 2023, 47(1):1-13.
28- Mehmet Gül,Esra Ayan, Ebru Destan, J.Austin Johnson, Alaleh Şafiei, Abdullah Kepçeoğlu, Merve Yılmaz, Fatma Betül Ertem, İlkin Yapıcı, Bilge Tosun, Nilüfer Baldır Nurettin Tokay, Zeliş Nergiz, Gözde Karakadioğlu, Seyide Seda Paydos, Cahine Kulakman, Cengiz Kaan Ferah, Ömür Güven, Necati Atalay, Enver Kamil Akcan, Haluk Çetinok, Nazlı Eylül Arslan, Kardelen Şabanoğlu, Bengisu Aşçı, Serra Tavlı, Helin Gümüşboğa, Sevde Altuntaş, Masami Otsuka, Mikako Fujita, Şaban Tekin, Halilibrahim Çiftçi̇, Serdar Durdağı, Ezgi Karaca, Burcu Kaplan Türköz, Burak Veli Kabasakal, Ahmet Kati, Hasan Demirci̇. Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source. Scientific Reports. 2023, 13(1):8123. DOI: 10.1038/s41598-023-33989-0.
2022
27- İsmail Erol, Seyfullah Enes Kotil, Fatih Ortakçı & Serdar Durdağı. Exploring the binding capacity of lactic acid bacteria derived bacteriocins against RBD of SARSCoV-2 Omicron variant by molecular simulations, 2023, Journal of Biomolecular Structure and Dynamics, DOI: 10.1080/07391102.2022.2158934
26- Özge Yeşildemir, Yasemin Akdevelioğlu, Aysu Duyan Çamurdan, Bahar Cuhacı Cakır, Selinay Basak Erdemli Köse, Deniz Arca Çakır, Anıl Yirun, Aylin Balcı Özyurt, Suna Sabuncuoğlu & Pinar Erkekoğlu. Estimated exposure to bisphenol A in breastfed and breastfed plus formula-fed infants in Turkey: a comparison study, Drug and Chemical Toxicology, 2022, https://doi.org/10.1080/01480545.2022.2160456
25- Özlem Tezol, Sıddıka Songül Yalçın, Anıl Yirün, Aylin Balcı Özyurt, Çetin Okuyaz & Pınar Erkekoğlu. Plasma bisphenol a and phthalate levels in children with cerebral palsy: a case-control study, International Journal of Environmental Health Research,2022, https://doi.org/10.1080/09603123.2022.2153811
24 - Cem Kaya, Kaan Birgül, Bahadır Bülbül. Fundamentals of chirality, resolution, and enantiopure molecule synthesis methods, Chirality, 2022, https://doi.org/10.1002/chir.23512
23- Michale Tapera, Hüseyin Kekeçmuhammed, Kader Şahin, Vagolu Siva Krishena, Christian Lherbet, Håvard Homberset, Tone Tønjum, Yunus Zorlu, Serdar Durdagı, Emin Saripinar, Discovery of new compounds as Mycobacterium tuberculosis growth and enoyl acyl carrier protein reductase (InhA) inhibitors, Chemistryselect, 2022, https://doi.org/10.1002/slct.202202819
22 - Nuriye Doğan, Sevtap Cağlar Yavuz, Kader Şahin, Müge Didem Orhan, Hüseyin Kekec Muhammed, Seyma Calıs, Fatma Öztürk Küp, Timuçin Avsar,Senem Akkoç, Michael Tapera, Onur Sahin, Turker Kılıc, Serdar Durdagı, Emin Saripinar, Synthesis, Characterization, Biological Activity and Molecular Modeling Studies of Novel Aminoguanidine Derivatives, Journal of Molecular Structure, 2022, 1270, 133899, https://www.sciencedirect.com/science/article/pii/S0022286022015538
21 - Mehmet Evren Öztürk, Anıl Yirün, Selinay Başak Erdemli-Köse, Aylin Balcı Özyurt, Deniz Arca Çakır, Didem Oral, and Pınar Erkekoğlu. Evaluation of the toxic effects of thimerosal and/or aluminum hydroxide in SH-SY5Y cell line. Human and Experimental Toxicology. 2022, 41:9603271221136206 https://journals.sagepub.com/doi/10.1177/09603271221136206
20- Neriman İpek Kırmızı Sönmez, Özlem Bahadır Acıkara, Ayse Arzu Sakul, Bade Cevriye Bahtiyar, Hilal Bardakçı, Timur Hakan Barak, Hanefi Özbek. H. H HPTLC quantification, assessment of antioxidant potential and in vivo hypoglycemic activity of Scorzonera latifolia (Fisch. & Mey.) DC and its major compounds. South African Journal of Botany. 150:671-677, 2022, doi: 10.1016/j.sajb.2022.07.041 https://www.sciencedirect.com/science/article/pii/S0254629922004124
19 - Şeyma Çalış, Berna Doğan, Serdar Durdağı, Asuman Çelebi, Özlem Yapı, Türker Kılıç, Eda Tahir Turanlı & Timuçin Avşar. A novel BH3 mimetic Bcl-2 inhibitor promotes autophagic cell death and reduces in vivo Glioblastoma tumor growth. Cell Death Discov. 8, 433, 2022, https://doi.org/10.1038/s41420-022-01225-9
18- Şeyma Çalış, Berna Doğan, Serdar Durdağı, Asuman Çelebi, Özlem Yapıcı,Türker Kılıç,Eda Tahir Turanlı, Timuçin Avşar. A novel BH3 mimetic Bcl-2 inhibitor promotes autophagic cell death and reduces in vivo Glioblastoma tumor growth, Cell Death Discovery, 2022
17- Nuriye Doğan, Dr. Sevtap Çağlar Yavuz, Kader Şahin, Müge Didem Orhan, Hüseyin Kekeçmuhammed, Şeyma Çalış, Fatma Öztürk Küp, Yardım. Timuçin Avşar, Senem Akkoç, Michael Tapera, Onur Şahin, Türker Kılıç, Serdar Durdağı, Emin Sarıpınar Synthesis, Characterization, Biological Activity and Molecular Modeling Studies of Novel Aminoguanidine Derivatives, ChemistrySelect, 2022
16- Hüseyin Tunç, Serdar Durdağı, Enes Seyfullah Kotil. The drug-isolate-fold change-based artificial neural network model predicts the resistance profiles of the HIV-1 protease inhibitors , Journal of Chemical Information and Modeling, 2022
15- Serdar Durdağı, Ayse Sahaboglu, Berna Dogan, İsmail Erol, Dennis-Dominik Rosmus, Clemens Lange, Basma Sukkar, Shefalee K. Bhavsar, Tatian Castor, Mentor Sopjani, Peter Wieghofer, Zohreh Hosseinzadeh,. Interplay between sensitivity of hERG Kv11.1 potassium channel to Janus Kinase 2 and stimulation of retinoblastoma Y79 cells migration , Nature Communications, 2022.
14- Basma Sukkar, Ayse Sahaboglu, Lalehan Oktay, Aylin Moayedi, Shima Zenouri, Tamer Al-Maghout, Antolin Cantó, María Miranda, Serdar Durdağı, Zohreh Hosseinzadeh,. Altered Orai1 calcium channel activity within stressed Müller glial cells and degenerated mouse retina , Nature Communications, 2022.
13- Bircan Dinç, Berna Doğan, Serdar Durdağı. Usage of Differential Scanning Calorimetry (DSC) in High Throughput Ligand Screening Assays: A Game Changer in the Field , Biophysical Journal, 2022.
12- Berkay Selçuk, İsmail Erol, Serdar Durdağı, Ogün Adebali. Evolutionary association of receptor-wide amino acids with G protein–coupling selectivity in aminergic GPCRs, Life Science Alliance, 5(10), 2022. DOI:10.26508/lsa.202201439
11- Ferah Cömert Önder, Pınar Siyah, Serdar Durdağı, Mehmet Ay,Bülent Özpolat. Novel etodolac derivatives as eukaryotic elongation factor 2 kinase (eEF2K) inhibitors for targeted cancer therapy , RSC Medicinal Chemistry, 13(7), 840-849, 2022.
10- Busecan Aksoydan, Serdar Durdağı. Virtual Drug Repurposing Study for the CGRPR Identifies Pentagastrin and Leuprorelin as Putative Candidates , Journal of Molecular Graphics and Modelling, 116, 2022. DOI:10.1016/j.jmgm.2022.108254
9- Samman Mansur, Gülru Kayık, Serdar Durdağı, Özge Şensoy. Mechanistic insight into the impact of a bivalent ligand on the structure and dynamics of a GPCR oligomer , Computational and Structural Biotechnology Journal, 20, 925-936, 2022.
8- Serdar Durdağı, Müge Didem Orhan, Busecan Aksoydan, Şeyma Çalış, Berna Doğan, Kader Şahin, Aida Shahraki, Necla Birgül İyison, Timuçin Avşar. Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of SARS-CoV-2: A Combined in silico and in vitro Study , Molecular Informatics, 41(2), 2022. DOI: 10.1002/minf.202100062
7- Ferah Cömert Önder, Kader Şahin, Murat Şentürk ,Serdar Durdağı, Mehmet Ay. Identifying highly effective coumarin-based novel cholinesterase inhibitors by in silico and in vitro studies, Journal of Molecular Graphics and Modelling, 115, 2022. DOI: 10.1016/j.jmgm.2022.108210
6- Busecan Aksoydan, Serdar Durdağı. Molecular simulations reveal the impact of RAMP1 on ligand binding and dynamics of calcitonin gene-related peptide receptor (CGRPR) heterodimer, Computers in Biology and Medicine, 141, 2022. DOI: 10.1016/j.compbiomed.2021.105130
5- Çetin Bayrak, Gülşah Yıldızhan, Namık Kılınç, Serdar Durdağı, Abdullah Menzek, Synthesis and Aldose Reductase Inhibition Effects of Novel N-Benzyl-4-Methoxyaniline Derivatives, 19(1), 2022. DOI: 10.1002/cbdv.202100530
4- Kübra Doğan, Ebru Erol, Müge Didem Orhan, Zehra Değirmenci, Tuğçe Kan, Ayşen Güngör, Belkıs Yasa, Timuçin Avşar, Yüksel Çetin, Serdar Durdağı, Mustafa Güzel. Instant determination of the artemisinin from various Artemisia annua L. extracts by LC-ESI-MS/MS and their in-silico modelling and in vitro antiviral activity studies against SARS-CoV-2, Phytochemical Analysis, 33(2), 303-319, 2022.
3- Öykü İrem Ballı, Vladimir N.Uversky, Serdar Durdağı, Orkid Coşkuner-Weber. Challenges and limitations in the studies of glycoproteins: A computational chemist s perspective, Proteins-Structure Function and Bioinformatics, 90(2), 322-339, 2022.
2- Yüksel Çetin, Şeyma Aydınlık Ayşen Güngör, Tuğçe Kan, Timuçin Avşar, Serdar Durdağı. Review on In silico Methods, High-throughput Screening Techniques, and Cell Culture Based In Vitro Assays for SARS-CoV-2, Current Medicinal Chemistry, 2022. DOI: 10.2174/0929867329666220627121416.
1- Serdar Durdağı, Timuçin Avşar, Müge Didem Orhan, Müge Serhatlı, Bertan Koray Balcıoğlu, Hasan Ümit Öztürk, Alişan Kayabölen, Yüksel Çetin, Şeyma Aydınlik, Tuğba Bağcı-Önder, Şaban Tekin, Hasan Demirci, Mustafa Güzel, Atilla Akdemir, Şeyma Calış, Lalehan Oktay, İlayda Tolu, Yaşar Enes Bütün, Ece Erdemoğlu, Alpsu Olkan, Nurettin Tokay, Şeyma Işık, Ayşenur Özcan, Elif Acar, Şehriban Büyükkiliç, Yeşim Yumak. The neutralization effect of montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies, Molecular Therapy, 30(2), 963-974, 2022
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